API documentation#
- dpdata package
BondOrderSystem
LabeledSystem
LabeledSystem.DTYPES
LabeledSystem.affine_map_fv()
LabeledSystem.correction()
LabeledSystem.from_3dmol()
LabeledSystem.from_abacus_lcao_md()
LabeledSystem.from_abacus_lcao_relax()
LabeledSystem.from_abacus_lcao_scf()
LabeledSystem.from_abacus_md()
LabeledSystem.from_abacus_pw_md()
LabeledSystem.from_abacus_pw_relax()
LabeledSystem.from_abacus_pw_scf()
LabeledSystem.from_abacus_relax()
LabeledSystem.from_abacus_scf()
LabeledSystem.from_abacus_stru()
LabeledSystem.from_amber_md()
LabeledSystem.from_ase_structure()
LabeledSystem.from_ase_traj()
LabeledSystem.from_atomconfig()
LabeledSystem.from_contcar()
LabeledSystem.from_cp2k_aimd_output()
LabeledSystem.from_cp2k_output()
LabeledSystem.from_deepmd()
LabeledSystem.from_deepmd_comp()
LabeledSystem.from_deepmd_hdf5()
LabeledSystem.from_deepmd_npy()
LabeledSystem.from_deepmd_npy_mixed()
LabeledSystem.from_deepmd_raw()
LabeledSystem.from_dftbplus()
LabeledSystem.from_dump()
LabeledSystem.from_fhi_aims_md()
LabeledSystem.from_fhi_aims_output()
LabeledSystem.from_fhi_aims_scf()
LabeledSystem.from_finalconfig()
LabeledSystem.from_fmt_obj()
LabeledSystem.from_gaussian_gjf()
LabeledSystem.from_gaussian_log()
LabeledSystem.from_gaussian_md()
LabeledSystem.from_gro()
LabeledSystem.from_gromacs_gro()
LabeledSystem.from_lammps_dump()
LabeledSystem.from_lammps_lmp()
LabeledSystem.from_list()
LabeledSystem.from_lmp()
LabeledSystem.from_mlmd()
LabeledSystem.from_mol()
LabeledSystem.from_mol_file()
LabeledSystem.from_movement()
LabeledSystem.from_n2p2()
LabeledSystem.from_openmx_md()
LabeledSystem.from_orca_spout()
LabeledSystem.from_outcar()
LabeledSystem.from_poscar()
LabeledSystem.from_psi4_inp()
LabeledSystem.from_psi4_out()
LabeledSystem.from_pwmat_atomconfig()
LabeledSystem.from_pwmat_finalconfig()
LabeledSystem.from_pwmat_mlmd()
LabeledSystem.from_pwmat_movement()
LabeledSystem.from_pwmat_output()
LabeledSystem.from_pymatgen_computedstructureentry()
LabeledSystem.from_pymatgen_molecule()
LabeledSystem.from_pymatgen_structure()
LabeledSystem.from_qe_cp_traj()
LabeledSystem.from_qe_pw_scf()
LabeledSystem.from_quip_gap_xyz()
LabeledSystem.from_quip_gap_xyz_file()
LabeledSystem.from_sdf()
LabeledSystem.from_sdf_file()
LabeledSystem.from_siesta_aiMD_output()
LabeledSystem.from_siesta_aimd_output()
LabeledSystem.from_siesta_output()
LabeledSystem.from_sqm_in()
LabeledSystem.from_sqm_out()
LabeledSystem.from_stru()
LabeledSystem.from_vasp_contcar()
LabeledSystem.from_vasp_outcar()
LabeledSystem.from_vasp_poscar()
LabeledSystem.from_vasp_string()
LabeledSystem.from_vasp_xml()
LabeledSystem.from_xml()
LabeledSystem.from_xyz()
LabeledSystem.has_forces()
LabeledSystem.has_virial()
LabeledSystem.post_funcs
LabeledSystem.remove_outlier()
LabeledSystem.rot_frame_lower_triangular()
LabeledSystem.to_3dmol()
LabeledSystem.to_abacus_lcao_md()
LabeledSystem.to_abacus_lcao_relax()
LabeledSystem.to_abacus_lcao_scf()
LabeledSystem.to_abacus_md()
LabeledSystem.to_abacus_pw_md()
LabeledSystem.to_abacus_pw_relax()
LabeledSystem.to_abacus_pw_scf()
LabeledSystem.to_abacus_relax()
LabeledSystem.to_abacus_scf()
LabeledSystem.to_abacus_stru()
LabeledSystem.to_amber_md()
LabeledSystem.to_ase_structure()
LabeledSystem.to_ase_traj()
LabeledSystem.to_atomconfig()
LabeledSystem.to_contcar()
LabeledSystem.to_cp2k_aimd_output()
LabeledSystem.to_cp2k_output()
LabeledSystem.to_deepmd()
LabeledSystem.to_deepmd_comp()
LabeledSystem.to_deepmd_hdf5()
LabeledSystem.to_deepmd_npy()
LabeledSystem.to_deepmd_npy_mixed()
LabeledSystem.to_deepmd_raw()
LabeledSystem.to_dftbplus()
LabeledSystem.to_dump()
LabeledSystem.to_fhi_aims_md()
LabeledSystem.to_fhi_aims_output()
LabeledSystem.to_fhi_aims_scf()
LabeledSystem.to_finalconfig()
LabeledSystem.to_fmt_obj()
LabeledSystem.to_gaussian_gjf()
LabeledSystem.to_gaussian_log()
LabeledSystem.to_gaussian_md()
LabeledSystem.to_gro()
LabeledSystem.to_gromacs_gro()
LabeledSystem.to_lammps_dump()
LabeledSystem.to_lammps_lmp()
LabeledSystem.to_list()
LabeledSystem.to_lmp()
LabeledSystem.to_mlmd()
LabeledSystem.to_mol()
LabeledSystem.to_mol_file()
LabeledSystem.to_movement()
LabeledSystem.to_n2p2()
LabeledSystem.to_openmx_md()
LabeledSystem.to_orca_spout()
LabeledSystem.to_outcar()
LabeledSystem.to_poscar()
LabeledSystem.to_psi4_inp()
LabeledSystem.to_psi4_out()
LabeledSystem.to_pwmat_atomconfig()
LabeledSystem.to_pwmat_finalconfig()
LabeledSystem.to_pwmat_mlmd()
LabeledSystem.to_pwmat_movement()
LabeledSystem.to_pwmat_output()
LabeledSystem.to_pymatgen_ComputedStructureEntry()
LabeledSystem.to_pymatgen_computedstructureentry()
LabeledSystem.to_pymatgen_molecule()
LabeledSystem.to_pymatgen_structure()
LabeledSystem.to_qe_cp_traj()
LabeledSystem.to_qe_pw_scf()
LabeledSystem.to_quip_gap_xyz()
LabeledSystem.to_quip_gap_xyz_file()
LabeledSystem.to_sdf()
LabeledSystem.to_sdf_file()
LabeledSystem.to_siesta_aimd_output()
LabeledSystem.to_siesta_output()
LabeledSystem.to_sqm_in()
LabeledSystem.to_sqm_out()
LabeledSystem.to_stru()
LabeledSystem.to_vasp_contcar()
LabeledSystem.to_vasp_outcar()
LabeledSystem.to_vasp_poscar()
LabeledSystem.to_vasp_string()
LabeledSystem.to_vasp_xml()
LabeledSystem.to_xml()
LabeledSystem.to_xyz()
MultiSystems
MultiSystems.append()
MultiSystems.check_atom_names()
MultiSystems.correction()
MultiSystems.from_3dmol()
MultiSystems.from_abacus_lcao_md()
MultiSystems.from_abacus_lcao_relax()
MultiSystems.from_abacus_lcao_scf()
MultiSystems.from_abacus_md()
MultiSystems.from_abacus_pw_md()
MultiSystems.from_abacus_pw_relax()
MultiSystems.from_abacus_pw_scf()
MultiSystems.from_abacus_relax()
MultiSystems.from_abacus_scf()
MultiSystems.from_abacus_stru()
MultiSystems.from_amber_md()
MultiSystems.from_ase_structure()
MultiSystems.from_ase_traj()
MultiSystems.from_atomconfig()
MultiSystems.from_contcar()
MultiSystems.from_cp2k_aimd_output()
MultiSystems.from_cp2k_output()
MultiSystems.from_deepmd()
MultiSystems.from_deepmd_comp()
MultiSystems.from_deepmd_hdf5()
MultiSystems.from_deepmd_npy()
MultiSystems.from_deepmd_npy_mixed()
MultiSystems.from_deepmd_raw()
MultiSystems.from_dftbplus()
MultiSystems.from_dir()
MultiSystems.from_dump()
MultiSystems.from_fhi_aims_md()
MultiSystems.from_fhi_aims_output()
MultiSystems.from_fhi_aims_scf()
MultiSystems.from_file()
MultiSystems.from_finalconfig()
MultiSystems.from_fmt_obj()
MultiSystems.from_gaussian_gjf()
MultiSystems.from_gaussian_log()
MultiSystems.from_gaussian_md()
MultiSystems.from_gro()
MultiSystems.from_gromacs_gro()
MultiSystems.from_lammps_dump()
MultiSystems.from_lammps_lmp()
MultiSystems.from_list()
MultiSystems.from_lmp()
MultiSystems.from_mlmd()
MultiSystems.from_mol()
MultiSystems.from_mol_file()
MultiSystems.from_movement()
MultiSystems.from_n2p2()
MultiSystems.from_openmx_md()
MultiSystems.from_orca_spout()
MultiSystems.from_outcar()
MultiSystems.from_poscar()
MultiSystems.from_psi4_inp()
MultiSystems.from_psi4_out()
MultiSystems.from_pwmat_atomconfig()
MultiSystems.from_pwmat_finalconfig()
MultiSystems.from_pwmat_mlmd()
MultiSystems.from_pwmat_movement()
MultiSystems.from_pwmat_output()
MultiSystems.from_pymatgen_computedstructureentry()
MultiSystems.from_pymatgen_molecule()
MultiSystems.from_pymatgen_structure()
MultiSystems.from_qe_cp_traj()
MultiSystems.from_qe_pw_scf()
MultiSystems.from_quip_gap_xyz()
MultiSystems.from_quip_gap_xyz_file()
MultiSystems.from_sdf()
MultiSystems.from_sdf_file()
MultiSystems.from_siesta_aiMD_output()
MultiSystems.from_siesta_aimd_output()
MultiSystems.from_siesta_output()
MultiSystems.from_sqm_in()
MultiSystems.from_sqm_out()
MultiSystems.from_stru()
MultiSystems.from_vasp_contcar()
MultiSystems.from_vasp_outcar()
MultiSystems.from_vasp_poscar()
MultiSystems.from_vasp_string()
MultiSystems.from_vasp_xml()
MultiSystems.from_xml()
MultiSystems.from_xyz()
MultiSystems.get_nframes()
MultiSystems.load_systems_from_file()
MultiSystems.minimize()
MultiSystems.pick_atom_idx()
MultiSystems.predict()
MultiSystems.to()
MultiSystems.to_3dmol()
MultiSystems.to_abacus_lcao_md()
MultiSystems.to_abacus_lcao_relax()
MultiSystems.to_abacus_lcao_scf()
MultiSystems.to_abacus_md()
MultiSystems.to_abacus_pw_md()
MultiSystems.to_abacus_pw_relax()
MultiSystems.to_abacus_pw_scf()
MultiSystems.to_abacus_relax()
MultiSystems.to_abacus_scf()
MultiSystems.to_abacus_stru()
MultiSystems.to_amber_md()
MultiSystems.to_ase_structure()
MultiSystems.to_ase_traj()
MultiSystems.to_atomconfig()
MultiSystems.to_contcar()
MultiSystems.to_cp2k_aimd_output()
MultiSystems.to_cp2k_output()
MultiSystems.to_deepmd()
MultiSystems.to_deepmd_comp()
MultiSystems.to_deepmd_hdf5()
MultiSystems.to_deepmd_npy()
MultiSystems.to_deepmd_npy_mixed()
MultiSystems.to_deepmd_raw()
MultiSystems.to_dftbplus()
MultiSystems.to_dump()
MultiSystems.to_fhi_aims_md()
MultiSystems.to_fhi_aims_output()
MultiSystems.to_fhi_aims_scf()
MultiSystems.to_finalconfig()
MultiSystems.to_fmt_obj()
MultiSystems.to_gaussian_gjf()
MultiSystems.to_gaussian_log()
MultiSystems.to_gaussian_md()
MultiSystems.to_gro()
MultiSystems.to_gromacs_gro()
MultiSystems.to_lammps_dump()
MultiSystems.to_lammps_lmp()
MultiSystems.to_list()
MultiSystems.to_lmp()
MultiSystems.to_mlmd()
MultiSystems.to_mol()
MultiSystems.to_mol_file()
MultiSystems.to_movement()
MultiSystems.to_n2p2()
MultiSystems.to_openmx_md()
MultiSystems.to_orca_spout()
MultiSystems.to_outcar()
MultiSystems.to_poscar()
MultiSystems.to_psi4_inp()
MultiSystems.to_psi4_out()
MultiSystems.to_pwmat_atomconfig()
MultiSystems.to_pwmat_finalconfig()
MultiSystems.to_pwmat_mlmd()
MultiSystems.to_pwmat_movement()
MultiSystems.to_pwmat_output()
MultiSystems.to_pymatgen_ComputedStructureEntry()
MultiSystems.to_pymatgen_computedstructureentry()
MultiSystems.to_pymatgen_molecule()
MultiSystems.to_pymatgen_structure()
MultiSystems.to_qe_cp_traj()
MultiSystems.to_qe_pw_scf()
MultiSystems.to_quip_gap_xyz()
MultiSystems.to_quip_gap_xyz_file()
MultiSystems.to_sdf()
MultiSystems.to_sdf_file()
MultiSystems.to_siesta_aimd_output()
MultiSystems.to_siesta_output()
MultiSystems.to_sqm_in()
MultiSystems.to_sqm_out()
MultiSystems.to_stru()
MultiSystems.to_vasp_contcar()
MultiSystems.to_vasp_outcar()
MultiSystems.to_vasp_poscar()
MultiSystems.to_vasp_string()
MultiSystems.to_vasp_xml()
MultiSystems.to_xml()
MultiSystems.to_xyz()
MultiSystems.train_test_split()
System
System.DTYPES
System.add_atom_names()
System.affine_map()
System.append()
System.apply_pbc()
System.apply_type_map()
System.as_dict()
System.check_data()
System.check_type_map()
System.convert_to_mixed_type()
System.copy()
System.dump()
System.extend()
System.formula
System.formula_hash
System.from_3dmol()
System.from_abacus_lcao_md()
System.from_abacus_lcao_relax()
System.from_abacus_lcao_scf()
System.from_abacus_md()
System.from_abacus_pw_md()
System.from_abacus_pw_relax()
System.from_abacus_pw_scf()
System.from_abacus_relax()
System.from_abacus_scf()
System.from_abacus_stru()
System.from_amber_md()
System.from_ase_structure()
System.from_ase_traj()
System.from_atomconfig()
System.from_contcar()
System.from_cp2k_aimd_output()
System.from_cp2k_output()
System.from_deepmd()
System.from_deepmd_comp()
System.from_deepmd_hdf5()
System.from_deepmd_npy()
System.from_deepmd_npy_mixed()
System.from_deepmd_raw()
System.from_dftbplus()
System.from_dict()
System.from_dump()
System.from_fhi_aims_md()
System.from_fhi_aims_output()
System.from_fhi_aims_scf()
System.from_finalconfig()
System.from_fmt()
System.from_fmt_obj()
System.from_gaussian_gjf()
System.from_gaussian_log()
System.from_gaussian_md()
System.from_gro()
System.from_gromacs_gro()
System.from_lammps_dump()
System.from_lammps_lmp()
System.from_list()
System.from_lmp()
System.from_mlmd()
System.from_mol()
System.from_mol_file()
System.from_movement()
System.from_n2p2()
System.from_openmx_md()
System.from_orca_spout()
System.from_outcar()
System.from_poscar()
System.from_psi4_inp()
System.from_psi4_out()
System.from_pwmat_atomconfig()
System.from_pwmat_finalconfig()
System.from_pwmat_mlmd()
System.from_pwmat_movement()
System.from_pwmat_output()
System.from_pymatgen_computedstructureentry()
System.from_pymatgen_molecule()
System.from_pymatgen_structure()
System.from_qe_cp_traj()
System.from_qe_pw_scf()
System.from_quip_gap_xyz()
System.from_quip_gap_xyz_file()
System.from_sdf()
System.from_sdf_file()
System.from_siesta_aiMD_output()
System.from_siesta_aimd_output()
System.from_siesta_output()
System.from_sqm_in()
System.from_sqm_out()
System.from_stru()
System.from_vasp_contcar()
System.from_vasp_outcar()
System.from_vasp_poscar()
System.from_vasp_string()
System.from_vasp_xml()
System.from_xml()
System.from_xyz()
System.get_atom_names()
System.get_atom_numbs()
System.get_atom_types()
System.get_natoms()
System.get_nframes()
System.get_ntypes()
System.load()
System.map_atom_types()
System.minimize()
System.nopbc
System.perturb()
System.pick_atom_idx()
System.pick_by_amber_mask()
System.post_funcs
System.predict()
System.register_data_type()
System.remove_atom_names()
System.remove_pbc()
System.replace()
System.replicate()
System.rot_frame_lower_triangular()
System.rot_lower_triangular()
System.short_formula
System.short_name
System.shuffle()
System.sort_atom_names()
System.sort_atom_types()
System.sub_system()
System.to()
System.to_3dmol()
System.to_abacus_lcao_md()
System.to_abacus_lcao_relax()
System.to_abacus_lcao_scf()
System.to_abacus_md()
System.to_abacus_pw_md()
System.to_abacus_pw_relax()
System.to_abacus_pw_scf()
System.to_abacus_relax()
System.to_abacus_scf()
System.to_abacus_stru()
System.to_amber_md()
System.to_ase_structure()
System.to_ase_traj()
System.to_atomconfig()
System.to_contcar()
System.to_cp2k_aimd_output()
System.to_cp2k_output()
System.to_deepmd()
System.to_deepmd_comp()
System.to_deepmd_hdf5()
System.to_deepmd_npy()
System.to_deepmd_npy_mixed()
System.to_deepmd_raw()
System.to_dftbplus()
System.to_dump()
System.to_fhi_aims_md()
System.to_fhi_aims_output()
System.to_fhi_aims_scf()
System.to_finalconfig()
System.to_fmt_obj()
System.to_gaussian_gjf()
System.to_gaussian_log()
System.to_gaussian_md()
System.to_gro()
System.to_gromacs_gro()
System.to_lammps_dump()
System.to_lammps_lmp()
System.to_list()
System.to_lmp()
System.to_mlmd()
System.to_mol()
System.to_mol_file()
System.to_movement()
System.to_n2p2()
System.to_openmx_md()
System.to_orca_spout()
System.to_outcar()
System.to_poscar()
System.to_psi4_inp()
System.to_psi4_out()
System.to_pwmat_atomconfig()
System.to_pwmat_finalconfig()
System.to_pwmat_mlmd()
System.to_pwmat_movement()
System.to_pwmat_output()
System.to_pymatgen_ComputedStructureEntry()
System.to_pymatgen_computedstructureentry()
System.to_pymatgen_molecule()
System.to_pymatgen_structure()
System.to_qe_cp_traj()
System.to_qe_pw_scf()
System.to_quip_gap_xyz()
System.to_quip_gap_xyz_file()
System.to_sdf()
System.to_sdf_file()
System.to_siesta_aimd_output()
System.to_siesta_output()
System.to_sqm_in()
System.to_sqm_out()
System.to_stru()
System.to_vasp_contcar()
System.to_vasp_outcar()
System.to_vasp_poscar()
System.to_vasp_string()
System.to_vasp_xml()
System.to_xml()
System.to_xyz()
System.uniq_formula
- Subpackages
- dpdata.abacus package
- dpdata.amber package
- dpdata.cp2k package
- dpdata.deepmd package
- dpdata.dftbplus package
- dpdata.fhi_aims package
- dpdata.gaussian package
- dpdata.gromacs package
- dpdata.lammps package
- dpdata.openmx package
- dpdata.orca package
- dpdata.plugins package
- Submodules
- dpdata.plugins.3dmol module
- dpdata.plugins.abacus module
- dpdata.plugins.amber module
- dpdata.plugins.ase module
- dpdata.plugins.cp2k module
- dpdata.plugins.deepmd module
- dpdata.plugins.dftbplus module
- dpdata.plugins.fhi_aims module
- dpdata.plugins.gaussian module
- dpdata.plugins.gromacs module
- dpdata.plugins.lammps module
- dpdata.plugins.list module
- dpdata.plugins.n2p2 module
- dpdata.plugins.openmx module
- dpdata.plugins.orca module
- dpdata.plugins.psi4 module
- dpdata.plugins.pwmat module
- dpdata.plugins.pymatgen module
- dpdata.plugins.qe module
- dpdata.plugins.rdkit module
- dpdata.plugins.siesta module
- dpdata.plugins.vasp module
- dpdata.plugins.xyz module
- dpdata.psi4 package
- dpdata.pwmat package
- dpdata.pymatgen package
- dpdata.qe package
- dpdata.rdkit package
- dpdata.siesta package
- dpdata.vasp package
- dpdata.xyz package
- Submodules
- dpdata.ase_calculator module
- dpdata.bond_order_system module
- dpdata.cli module
- dpdata.data_type module
- dpdata.driver module
- dpdata.format module
Format
Format.MultiMode
Format.MultiModes
Format.from_bond_order_system()
Format.from_labeled_system()
Format.from_multi_systems()
Format.from_system()
Format.get_formats()
Format.get_from_methods()
Format.get_to_methods()
Format.mix_system()
Format.post()
Format.register()
Format.register_from()
Format.register_to()
Format.to_bond_order_system()
Format.to_labeled_system()
Format.to_multi_systems()
Format.to_system()
- dpdata.periodic_table module
- dpdata.plugin module
- dpdata.stat module
- dpdata.system module
LabeledSystem
LabeledSystem.DTYPES
LabeledSystem.affine_map_fv()
LabeledSystem.correction()
LabeledSystem.from_3dmol()
LabeledSystem.from_abacus_lcao_md()
LabeledSystem.from_abacus_lcao_relax()
LabeledSystem.from_abacus_lcao_scf()
LabeledSystem.from_abacus_md()
LabeledSystem.from_abacus_pw_md()
LabeledSystem.from_abacus_pw_relax()
LabeledSystem.from_abacus_pw_scf()
LabeledSystem.from_abacus_relax()
LabeledSystem.from_abacus_scf()
LabeledSystem.from_abacus_stru()
LabeledSystem.from_amber_md()
LabeledSystem.from_ase_structure()
LabeledSystem.from_ase_traj()
LabeledSystem.from_atomconfig()
LabeledSystem.from_contcar()
LabeledSystem.from_cp2k_aimd_output()
LabeledSystem.from_cp2k_output()
LabeledSystem.from_deepmd()
LabeledSystem.from_deepmd_comp()
LabeledSystem.from_deepmd_hdf5()
LabeledSystem.from_deepmd_npy()
LabeledSystem.from_deepmd_npy_mixed()
LabeledSystem.from_deepmd_raw()
LabeledSystem.from_dftbplus()
LabeledSystem.from_dump()
LabeledSystem.from_fhi_aims_md()
LabeledSystem.from_fhi_aims_output()
LabeledSystem.from_fhi_aims_scf()
LabeledSystem.from_finalconfig()
LabeledSystem.from_fmt_obj()
LabeledSystem.from_gaussian_gjf()
LabeledSystem.from_gaussian_log()
LabeledSystem.from_gaussian_md()
LabeledSystem.from_gro()
LabeledSystem.from_gromacs_gro()
LabeledSystem.from_lammps_dump()
LabeledSystem.from_lammps_lmp()
LabeledSystem.from_list()
LabeledSystem.from_lmp()
LabeledSystem.from_mlmd()
LabeledSystem.from_mol()
LabeledSystem.from_mol_file()
LabeledSystem.from_movement()
LabeledSystem.from_n2p2()
LabeledSystem.from_openmx_md()
LabeledSystem.from_orca_spout()
LabeledSystem.from_outcar()
LabeledSystem.from_poscar()
LabeledSystem.from_psi4_inp()
LabeledSystem.from_psi4_out()
LabeledSystem.from_pwmat_atomconfig()
LabeledSystem.from_pwmat_finalconfig()
LabeledSystem.from_pwmat_mlmd()
LabeledSystem.from_pwmat_movement()
LabeledSystem.from_pwmat_output()
LabeledSystem.from_pymatgen_computedstructureentry()
LabeledSystem.from_pymatgen_molecule()
LabeledSystem.from_pymatgen_structure()
LabeledSystem.from_qe_cp_traj()
LabeledSystem.from_qe_pw_scf()
LabeledSystem.from_quip_gap_xyz()
LabeledSystem.from_quip_gap_xyz_file()
LabeledSystem.from_sdf()
LabeledSystem.from_sdf_file()
LabeledSystem.from_siesta_aiMD_output()
LabeledSystem.from_siesta_aimd_output()
LabeledSystem.from_siesta_output()
LabeledSystem.from_sqm_in()
LabeledSystem.from_sqm_out()
LabeledSystem.from_stru()
LabeledSystem.from_vasp_contcar()
LabeledSystem.from_vasp_outcar()
LabeledSystem.from_vasp_poscar()
LabeledSystem.from_vasp_string()
LabeledSystem.from_vasp_xml()
LabeledSystem.from_xml()
LabeledSystem.from_xyz()
LabeledSystem.has_forces()
LabeledSystem.has_virial()
LabeledSystem.post_funcs
LabeledSystem.remove_outlier()
LabeledSystem.rot_frame_lower_triangular()
LabeledSystem.to_3dmol()
LabeledSystem.to_abacus_lcao_md()
LabeledSystem.to_abacus_lcao_relax()
LabeledSystem.to_abacus_lcao_scf()
LabeledSystem.to_abacus_md()
LabeledSystem.to_abacus_pw_md()
LabeledSystem.to_abacus_pw_relax()
LabeledSystem.to_abacus_pw_scf()
LabeledSystem.to_abacus_relax()
LabeledSystem.to_abacus_scf()
LabeledSystem.to_abacus_stru()
LabeledSystem.to_amber_md()
LabeledSystem.to_ase_structure()
LabeledSystem.to_ase_traj()
LabeledSystem.to_atomconfig()
LabeledSystem.to_contcar()
LabeledSystem.to_cp2k_aimd_output()
LabeledSystem.to_cp2k_output()
LabeledSystem.to_deepmd()
LabeledSystem.to_deepmd_comp()
LabeledSystem.to_deepmd_hdf5()
LabeledSystem.to_deepmd_npy()
LabeledSystem.to_deepmd_npy_mixed()
LabeledSystem.to_deepmd_raw()
LabeledSystem.to_dftbplus()
LabeledSystem.to_dump()
LabeledSystem.to_fhi_aims_md()
LabeledSystem.to_fhi_aims_output()
LabeledSystem.to_fhi_aims_scf()
LabeledSystem.to_finalconfig()
LabeledSystem.to_fmt_obj()
LabeledSystem.to_gaussian_gjf()
LabeledSystem.to_gaussian_log()
LabeledSystem.to_gaussian_md()
LabeledSystem.to_gro()
LabeledSystem.to_gromacs_gro()
LabeledSystem.to_lammps_dump()
LabeledSystem.to_lammps_lmp()
LabeledSystem.to_list()
LabeledSystem.to_lmp()
LabeledSystem.to_mlmd()
LabeledSystem.to_mol()
LabeledSystem.to_mol_file()
LabeledSystem.to_movement()
LabeledSystem.to_n2p2()
LabeledSystem.to_openmx_md()
LabeledSystem.to_orca_spout()
LabeledSystem.to_outcar()
LabeledSystem.to_poscar()
LabeledSystem.to_psi4_inp()
LabeledSystem.to_psi4_out()
LabeledSystem.to_pwmat_atomconfig()
LabeledSystem.to_pwmat_finalconfig()
LabeledSystem.to_pwmat_mlmd()
LabeledSystem.to_pwmat_movement()
LabeledSystem.to_pwmat_output()
LabeledSystem.to_pymatgen_ComputedStructureEntry()
LabeledSystem.to_pymatgen_computedstructureentry()
LabeledSystem.to_pymatgen_molecule()
LabeledSystem.to_pymatgen_structure()
LabeledSystem.to_qe_cp_traj()
LabeledSystem.to_qe_pw_scf()
LabeledSystem.to_quip_gap_xyz()
LabeledSystem.to_quip_gap_xyz_file()
LabeledSystem.to_sdf()
LabeledSystem.to_sdf_file()
LabeledSystem.to_siesta_aimd_output()
LabeledSystem.to_siesta_output()
LabeledSystem.to_sqm_in()
LabeledSystem.to_sqm_out()
LabeledSystem.to_stru()
LabeledSystem.to_vasp_contcar()
LabeledSystem.to_vasp_outcar()
LabeledSystem.to_vasp_poscar()
LabeledSystem.to_vasp_string()
LabeledSystem.to_vasp_xml()
LabeledSystem.to_xml()
LabeledSystem.to_xyz()
MultiSystems
MultiSystems.append()
MultiSystems.check_atom_names()
MultiSystems.correction()
MultiSystems.from_3dmol()
MultiSystems.from_abacus_lcao_md()
MultiSystems.from_abacus_lcao_relax()
MultiSystems.from_abacus_lcao_scf()
MultiSystems.from_abacus_md()
MultiSystems.from_abacus_pw_md()
MultiSystems.from_abacus_pw_relax()
MultiSystems.from_abacus_pw_scf()
MultiSystems.from_abacus_relax()
MultiSystems.from_abacus_scf()
MultiSystems.from_abacus_stru()
MultiSystems.from_amber_md()
MultiSystems.from_ase_structure()
MultiSystems.from_ase_traj()
MultiSystems.from_atomconfig()
MultiSystems.from_contcar()
MultiSystems.from_cp2k_aimd_output()
MultiSystems.from_cp2k_output()
MultiSystems.from_deepmd()
MultiSystems.from_deepmd_comp()
MultiSystems.from_deepmd_hdf5()
MultiSystems.from_deepmd_npy()
MultiSystems.from_deepmd_npy_mixed()
MultiSystems.from_deepmd_raw()
MultiSystems.from_dftbplus()
MultiSystems.from_dir()
MultiSystems.from_dump()
MultiSystems.from_fhi_aims_md()
MultiSystems.from_fhi_aims_output()
MultiSystems.from_fhi_aims_scf()
MultiSystems.from_file()
MultiSystems.from_finalconfig()
MultiSystems.from_fmt_obj()
MultiSystems.from_gaussian_gjf()
MultiSystems.from_gaussian_log()
MultiSystems.from_gaussian_md()
MultiSystems.from_gro()
MultiSystems.from_gromacs_gro()
MultiSystems.from_lammps_dump()
MultiSystems.from_lammps_lmp()
MultiSystems.from_list()
MultiSystems.from_lmp()
MultiSystems.from_mlmd()
MultiSystems.from_mol()
MultiSystems.from_mol_file()
MultiSystems.from_movement()
MultiSystems.from_n2p2()
MultiSystems.from_openmx_md()
MultiSystems.from_orca_spout()
MultiSystems.from_outcar()
MultiSystems.from_poscar()
MultiSystems.from_psi4_inp()
MultiSystems.from_psi4_out()
MultiSystems.from_pwmat_atomconfig()
MultiSystems.from_pwmat_finalconfig()
MultiSystems.from_pwmat_mlmd()
MultiSystems.from_pwmat_movement()
MultiSystems.from_pwmat_output()
MultiSystems.from_pymatgen_computedstructureentry()
MultiSystems.from_pymatgen_molecule()
MultiSystems.from_pymatgen_structure()
MultiSystems.from_qe_cp_traj()
MultiSystems.from_qe_pw_scf()
MultiSystems.from_quip_gap_xyz()
MultiSystems.from_quip_gap_xyz_file()
MultiSystems.from_sdf()
MultiSystems.from_sdf_file()
MultiSystems.from_siesta_aiMD_output()
MultiSystems.from_siesta_aimd_output()
MultiSystems.from_siesta_output()
MultiSystems.from_sqm_in()
MultiSystems.from_sqm_out()
MultiSystems.from_stru()
MultiSystems.from_vasp_contcar()
MultiSystems.from_vasp_outcar()
MultiSystems.from_vasp_poscar()
MultiSystems.from_vasp_string()
MultiSystems.from_vasp_xml()
MultiSystems.from_xml()
MultiSystems.from_xyz()
MultiSystems.get_nframes()
MultiSystems.load_systems_from_file()
MultiSystems.minimize()
MultiSystems.pick_atom_idx()
MultiSystems.predict()
MultiSystems.to()
MultiSystems.to_3dmol()
MultiSystems.to_abacus_lcao_md()
MultiSystems.to_abacus_lcao_relax()
MultiSystems.to_abacus_lcao_scf()
MultiSystems.to_abacus_md()
MultiSystems.to_abacus_pw_md()
MultiSystems.to_abacus_pw_relax()
MultiSystems.to_abacus_pw_scf()
MultiSystems.to_abacus_relax()
MultiSystems.to_abacus_scf()
MultiSystems.to_abacus_stru()
MultiSystems.to_amber_md()
MultiSystems.to_ase_structure()
MultiSystems.to_ase_traj()
MultiSystems.to_atomconfig()
MultiSystems.to_contcar()
MultiSystems.to_cp2k_aimd_output()
MultiSystems.to_cp2k_output()
MultiSystems.to_deepmd()
MultiSystems.to_deepmd_comp()
MultiSystems.to_deepmd_hdf5()
MultiSystems.to_deepmd_npy()
MultiSystems.to_deepmd_npy_mixed()
MultiSystems.to_deepmd_raw()
MultiSystems.to_dftbplus()
MultiSystems.to_dump()
MultiSystems.to_fhi_aims_md()
MultiSystems.to_fhi_aims_output()
MultiSystems.to_fhi_aims_scf()
MultiSystems.to_finalconfig()
MultiSystems.to_fmt_obj()
MultiSystems.to_gaussian_gjf()
MultiSystems.to_gaussian_log()
MultiSystems.to_gaussian_md()
MultiSystems.to_gro()
MultiSystems.to_gromacs_gro()
MultiSystems.to_lammps_dump()
MultiSystems.to_lammps_lmp()
MultiSystems.to_list()
MultiSystems.to_lmp()
MultiSystems.to_mlmd()
MultiSystems.to_mol()
MultiSystems.to_mol_file()
MultiSystems.to_movement()
MultiSystems.to_n2p2()
MultiSystems.to_openmx_md()
MultiSystems.to_orca_spout()
MultiSystems.to_outcar()
MultiSystems.to_poscar()
MultiSystems.to_psi4_inp()
MultiSystems.to_psi4_out()
MultiSystems.to_pwmat_atomconfig()
MultiSystems.to_pwmat_finalconfig()
MultiSystems.to_pwmat_mlmd()
MultiSystems.to_pwmat_movement()
MultiSystems.to_pwmat_output()
MultiSystems.to_pymatgen_ComputedStructureEntry()
MultiSystems.to_pymatgen_computedstructureentry()
MultiSystems.to_pymatgen_molecule()
MultiSystems.to_pymatgen_structure()
MultiSystems.to_qe_cp_traj()
MultiSystems.to_qe_pw_scf()
MultiSystems.to_quip_gap_xyz()
MultiSystems.to_quip_gap_xyz_file()
MultiSystems.to_sdf()
MultiSystems.to_sdf_file()
MultiSystems.to_siesta_aimd_output()
MultiSystems.to_siesta_output()
MultiSystems.to_sqm_in()
MultiSystems.to_sqm_out()
MultiSystems.to_stru()
MultiSystems.to_vasp_contcar()
MultiSystems.to_vasp_outcar()
MultiSystems.to_vasp_poscar()
MultiSystems.to_vasp_string()
MultiSystems.to_vasp_xml()
MultiSystems.to_xml()
MultiSystems.to_xyz()
MultiSystems.train_test_split()
System
System.DTYPES
System.add_atom_names()
System.affine_map()
System.append()
System.apply_pbc()
System.apply_type_map()
System.as_dict()
System.check_data()
System.check_type_map()
System.convert_to_mixed_type()
System.copy()
System.dump()
System.extend()
System.formula
System.formula_hash
System.from_3dmol()
System.from_abacus_lcao_md()
System.from_abacus_lcao_relax()
System.from_abacus_lcao_scf()
System.from_abacus_md()
System.from_abacus_pw_md()
System.from_abacus_pw_relax()
System.from_abacus_pw_scf()
System.from_abacus_relax()
System.from_abacus_scf()
System.from_abacus_stru()
System.from_amber_md()
System.from_ase_structure()
System.from_ase_traj()
System.from_atomconfig()
System.from_contcar()
System.from_cp2k_aimd_output()
System.from_cp2k_output()
System.from_deepmd()
System.from_deepmd_comp()
System.from_deepmd_hdf5()
System.from_deepmd_npy()
System.from_deepmd_npy_mixed()
System.from_deepmd_raw()
System.from_dftbplus()
System.from_dict()
System.from_dump()
System.from_fhi_aims_md()
System.from_fhi_aims_output()
System.from_fhi_aims_scf()
System.from_finalconfig()
System.from_fmt()
System.from_fmt_obj()
System.from_gaussian_gjf()
System.from_gaussian_log()
System.from_gaussian_md()
System.from_gro()
System.from_gromacs_gro()
System.from_lammps_dump()
System.from_lammps_lmp()
System.from_list()
System.from_lmp()
System.from_mlmd()
System.from_mol()
System.from_mol_file()
System.from_movement()
System.from_n2p2()
System.from_openmx_md()
System.from_orca_spout()
System.from_outcar()
System.from_poscar()
System.from_psi4_inp()
System.from_psi4_out()
System.from_pwmat_atomconfig()
System.from_pwmat_finalconfig()
System.from_pwmat_mlmd()
System.from_pwmat_movement()
System.from_pwmat_output()
System.from_pymatgen_computedstructureentry()
System.from_pymatgen_molecule()
System.from_pymatgen_structure()
System.from_qe_cp_traj()
System.from_qe_pw_scf()
System.from_quip_gap_xyz()
System.from_quip_gap_xyz_file()
System.from_sdf()
System.from_sdf_file()
System.from_siesta_aiMD_output()
System.from_siesta_aimd_output()
System.from_siesta_output()
System.from_sqm_in()
System.from_sqm_out()
System.from_stru()
System.from_vasp_contcar()
System.from_vasp_outcar()
System.from_vasp_poscar()
System.from_vasp_string()
System.from_vasp_xml()
System.from_xml()
System.from_xyz()
System.get_atom_names()
System.get_atom_numbs()
System.get_atom_types()
System.get_natoms()
System.get_nframes()
System.get_ntypes()
System.load()
System.map_atom_types()
System.minimize()
System.nopbc
System.perturb()
System.pick_atom_idx()
System.pick_by_amber_mask()
System.post_funcs
System.predict()
System.register_data_type()
System.remove_atom_names()
System.remove_pbc()
System.replace()
System.replicate()
System.rot_frame_lower_triangular()
System.rot_lower_triangular()
System.short_formula
System.short_name
System.shuffle()
System.sort_atom_names()
System.sort_atom_types()
System.sub_system()
System.to()
System.to_3dmol()
System.to_abacus_lcao_md()
System.to_abacus_lcao_relax()
System.to_abacus_lcao_scf()
System.to_abacus_md()
System.to_abacus_pw_md()
System.to_abacus_pw_relax()
System.to_abacus_pw_scf()
System.to_abacus_relax()
System.to_abacus_scf()
System.to_abacus_stru()
System.to_amber_md()
System.to_ase_structure()
System.to_ase_traj()
System.to_atomconfig()
System.to_contcar()
System.to_cp2k_aimd_output()
System.to_cp2k_output()
System.to_deepmd()
System.to_deepmd_comp()
System.to_deepmd_hdf5()
System.to_deepmd_npy()
System.to_deepmd_npy_mixed()
System.to_deepmd_raw()
System.to_dftbplus()
System.to_dump()
System.to_fhi_aims_md()
System.to_fhi_aims_output()
System.to_fhi_aims_scf()
System.to_finalconfig()
System.to_fmt_obj()
System.to_gaussian_gjf()
System.to_gaussian_log()
System.to_gaussian_md()
System.to_gro()
System.to_gromacs_gro()
System.to_lammps_dump()
System.to_lammps_lmp()
System.to_list()
System.to_lmp()
System.to_mlmd()
System.to_mol()
System.to_mol_file()
System.to_movement()
System.to_n2p2()
System.to_openmx_md()
System.to_orca_spout()
System.to_outcar()
System.to_poscar()
System.to_psi4_inp()
System.to_psi4_out()
System.to_pwmat_atomconfig()
System.to_pwmat_finalconfig()
System.to_pwmat_mlmd()
System.to_pwmat_movement()
System.to_pwmat_output()
System.to_pymatgen_ComputedStructureEntry()
System.to_pymatgen_computedstructureentry()
System.to_pymatgen_molecule()
System.to_pymatgen_structure()
System.to_qe_cp_traj()
System.to_qe_pw_scf()
System.to_quip_gap_xyz()
System.to_quip_gap_xyz_file()
System.to_sdf()
System.to_sdf_file()
System.to_siesta_aimd_output()
System.to_siesta_output()
System.to_sqm_in()
System.to_sqm_out()
System.to_stru()
System.to_vasp_contcar()
System.to_vasp_outcar()
System.to_vasp_poscar()
System.to_vasp_string()
System.to_vasp_xml()
System.to_xml()
System.to_xyz()
System.uniq_formula
add_format_methods()
get_atom_perturb_vector()
get_cell_perturb_matrix()
get_cls_name()
load_format()
- dpdata.unit module
- dpdata.utils module